Omni-stainer user guide
  • ▶️Overview
  • Product Guides
    • 🥳Quick Start: Omni-Stainer™ Bundles
    • 📦Omni-Stainer™ Box Contents
    • 🛍️Additional materials
    • ☑️S12 Assembly and Sample Prep
    • ☑️C12 Assembly and Sample Prep
    • 🥇Sample Mounting Instructions
    • 🧑‍🔬Manual Operation and "Blue Dye Demo" Manual Protocol
    • 🤖Automation (Opentrons OT-2) Setup
      • 📋Omni-Stainer Automation Overview
      • 📥Importing labware definitions
        • 🆕Opentrons App v7 Updated Labware Definitions
      • ⛱️StainWorks
      • 🗺️Labware Layouts
      • Thermal Sheath & Temperature-controlled incubations
    • 💙"Blue Dye Demo" Automated Protocol
    • 💾Software Requirements
  • Protocol Knowledge Base
    • PhenoCycler® (CODEX)
    • Gram Stain
    • IF
    • IHC
    • H&E
    • RNAScope
    • Opal
    • IMC
  • Background Knowledge, LLM semantic training data
    • 🗄️Background info and Lens training docs
      • Importing labware definitions
      • StainWorks software: a centralized app for accessing and configuring protocols
      • Reagent Layout files
      • Running the "Blue Dye Demo" protocol
      • Copy of CODEX (PhenoCyler™)
        • CODEX Reagent Setup
      • Temperature-controlled incubations
      • Page 2
      • ParheliaBio.com content
        • Advanced Tissue Staining Solutions | ParheliaBio
        • Omni-Stainer™ S12 - Automation Bundle
        • Omni-Stainer™ S12 - Manual Operation Bundle
        • Shop
        • Omni-Stainer™ S12 Thermal Sheath
        • Omni-Stainer™ C12 - Automation Bundle
        • Omni-Stainer™ C12 Thermal Sheath
        • Consumables Archives
        • Conditioning Reagent 5ml Bottle
        • Omni-Stainer™ C12 - Manual Operation Bundle
        • S12 Coverpads - 48 Pack
        • C12 Filter Paper
        • Opentrons Robots Archives
        • S12 Filter Paper
        • C12 Support Pad - 48 Pack
        • Opentrons OT-2 Liquid Handling Robot
        • Opentrons Single-Channel Electronic Pipette p20 (GEN2)
        • Opentrons 300 µl Pipette Tip Tip Racks - 9600 tips
        • Greater Tissue Staining Workflow Efficiency. Slide Staining Kits
      • Opentrons setup guides
        • Opentronssetupguides
        • GetstartedImportaprotocol
      • More Parheliabio.com content
        • Howitworks
        • Parhelia Biosciences FAQs
          • Page 1
            • Frequently asked questions parheliabio website
        • ParheliaFrequentlyaskedquestions
        • Parhelia Omni-Stainer FAQ
      • Meet your Parhelia Omnistainer
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  • QInstruments ColdPlate Product Page
  • Temperature-controlled protocols
  • Temperature Modules
  • QInstruments ColdPlate

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  1. Product Guides
  2. Automation (Opentrons OT-2) Setup

Thermal Sheath & Temperature-controlled incubations

This page is under construction, please reach out to our team for help with the thermal sheath and temperature modules.

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Last updated 1 year ago

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Congrats on choosing the Omni-Stainer™ thermal sheath S12 / C12! The Omni-Stainer™ is made of heat-conductive aluminum and can be used in conjunction with a temperature control module, allowing the temperature to be programmatically controlled between -20° to 99.9°C. This enables a variety of protocols, such as FFPE Antigen Retrieval, smRNA-FISH, or CycIF to be performed directly inside the Omni-Stainer™ device. To run thermal incubations there are 3 main things you need

  1. A thermal module. We recommend QInstruments ColdPlate

  2. A temperature-controlled program

  3. A thermal sheath and Opentrons robot

Temperature-controlled protocols

  • Assemble Omni-Stainer as in the Assembly and Sample Prep protocols, make sure there is sufficient water in the base and the humidity barrier paper.

    • S12 Assembly and Sample Prep

    • C12 Assembly and Sample Prep

  • Place thermal sheet on top of the Omni-Stainer

  • Set up the temperature module on the deck of the QInstruments ColdPlate manual.

  • When running the protocols, make sure to select “omni_stainer_###_with_thermosheath”, where ### is the instrument model (i.e. S12_slides or C12_cslps)

  • During the calibration step, calibrate the pipette tip to the calibration point on top of the thermal sheath

When creating your own protocol, ensure that you utilize theopenShutter(...), and closeShutter(...) functions from the protocol header. Neglecting to do so may result in damage to your pipette, for which we cannot be held responsible.

Temperature Modules

QInstruments ColdPlate

Compact, lightweight, effective, and silent, it provides heating and cooling combined in a single unit. Fully adjustable from -20° to 99.9°C, its optimized thermo adapters and premium aluminium housing ensure excellent temperature control. Opentrons support remains available for assistance, despite this being a third-party module. With an easy setup and an extended warranty, the QInstruments module is a valuable addition to any laboratory setup.

At Parhelia , we value efficient, precise equipment. That's why for the Opentrons OT-2 to effectively utilize the Omni-Stainer S12 or C12 with a thermal sheath, we recommend the QInstruments thermal module. The current Opentrons thermal module is slightly too tall for the Omni-Stainer with thermal sheath, making QInstruments the ideal alternative. Their ColdPlate ensures unrivaled heating and cooling precision for demanding robotic applications.

If you have any questions, comments, or concerns please email

🤖
QInstruments ColdPlate Product Page
QInstruments ColdPlate Product Page
🚧
🚧
info@parheliabio.com
Omni-Stainer going onto thermal module and covered with thermal sheath