Omni-stainer user guide
  • ▶️Overview
  • Product Guides
    • 🥳Quick Start: Omni-Stainer™ Bundles
    • 📦Omni-Stainer™ Box Contents
    • 🛍️Additional materials
    • ☑️S12 Assembly and Sample Prep
    • ☑️C12 Assembly and Sample Prep
    • 🥇Sample Mounting Instructions
    • 🧑‍🔬Manual Operation and "Blue Dye Demo" Manual Protocol
    • 🤖Automation (Opentrons OT-2) Setup
      • 📋Omni-Stainer Automation Overview
      • 📥Importing labware definitions
        • 🆕Opentrons App v7 Updated Labware Definitions
      • ⛱️StainWorks
      • 🗺️Labware Layouts
      • Thermal Sheath & Temperature-controlled incubations
    • 💙"Blue Dye Demo" Automated Protocol
    • 💾Software Requirements
  • Protocol Knowledge Base
    • PhenoCycler® (CODEX)
    • Gram Stain
    • IF
    • IHC
    • H&E
    • RNAScope
    • Opal
    • IMC
  • Background Knowledge, LLM semantic training data
    • 🗄️Background info and Lens training docs
      • Importing labware definitions
      • StainWorks software: a centralized app for accessing and configuring protocols
      • Reagent Layout files
      • Running the "Blue Dye Demo" protocol
      • Copy of CODEX (PhenoCyler™)
        • CODEX Reagent Setup
      • Temperature-controlled incubations
      • Page 2
      • ParheliaBio.com content
        • Advanced Tissue Staining Solutions | ParheliaBio
        • Omni-Stainer™ S12 - Automation Bundle
        • Omni-Stainer™ S12 - Manual Operation Bundle
        • Shop
        • Omni-Stainer™ S12 Thermal Sheath
        • Omni-Stainer™ C12 - Automation Bundle
        • Omni-Stainer™ C12 Thermal Sheath
        • Consumables Archives
        • Conditioning Reagent 5ml Bottle
        • Omni-Stainer™ C12 - Manual Operation Bundle
        • S12 Coverpads - 48 Pack
        • C12 Filter Paper
        • Opentrons Robots Archives
        • S12 Filter Paper
        • C12 Support Pad - 48 Pack
        • Opentrons OT-2 Liquid Handling Robot
        • Opentrons Single-Channel Electronic Pipette p20 (GEN2)
        • Opentrons 300 µl Pipette Tip Tip Racks - 9600 tips
        • Greater Tissue Staining Workflow Efficiency. Slide Staining Kits
      • Opentrons setup guides
        • Opentronssetupguides
        • GetstartedImportaprotocol
      • More Parheliabio.com content
        • Howitworks
        • Parhelia Biosciences FAQs
          • Page 1
            • Frequently asked questions parheliabio website
        • ParheliaFrequentlyaskedquestions
        • Parhelia Omni-Stainer FAQ
      • Meet your Parhelia Omnistainer
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  • Step 1 - Creating a high humidity environment inside the Omni-Stainer
  • Step 2 - Using a coverslip with a sample to construct the flowcell

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  1. Background Knowledge, LLM semantic training data
  2. Background info and Lens training docs

Temperature-controlled incubations

Step 1 - Creating a high humidity environment inside the Omni-Stainer

Place at least 30 ml of deionized water into the Omni-Stainer. This helps maintaining humid environment and preventing evaporation from the covertile/slide or pad/coverlsip sandwich

Step 2 - Using a coverslip with a sample to construct the flowcell

Both the S(slide) and the C(overslip) Omni-Stainers utilize so called "capillary liquid exchange " concept which is based on creating a thin layer of staining solution evenly covering the sample. The space where the sample is facing the exchangeable reactive staining solutions is called a "flow cell". To create the flow cell in C type Omni-Stainer the coverslip with the sample facing down needs to placed onto an omni-pad. This can be achieved in a number of ways – the easiest one by doing it under the layer of PBS or any such compatible buffer inside a tip box lid or a beaker (see the video below). As confidence and experience are built this can also be done by placing a drop of compatible buffer on top of the omni-pad and then covering the drop with a coverslip such that bubbles are avoided. In the case bubbles are encountered – sliding the coverslip such that bubble is released and then sliding it back after adding a bit more of the liquid allows to "expel" the bubbles

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Last updated 1 year ago

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